PH01001655G0120's details annotation
1.Annotation
ICBR annotation: HECT-domain domain containing protein, expressed
Blast result AT5G02880 : 8.00E-55
Blast annotation: ubiquitin-protein ligase 4
2.Location
Scaffold: PH01001655
Strand: -
| Region | Start | End |
| gene | 101892 | 104169 |
| mRNA | 101892 | 104169 |
| exon | 101892 | 102471 |
| exon | 102610 | 102730 |
| exon | 102866 | 102967 |
| exon | 103053 | 103169 |
| exon | 103249 | 103359 |
| exon | 103449 | 103681 |
| exon | 103728 | 104169 |
| CDS | 102245 | 102471 |
| CDS | 102610 | 102730 |
| CDS | 102866 | 102967 |
| CDS | 103053 | 103169 |
| CDS | 103249 | 103359 |
| CDS | 103449 | 103681 |
| CDS | 103728 | 103893 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.