Annotation of co-expression genes

PH01001658G0360's details annotation

1.Annotation

ICBR annotation: importin subunit beta, putative, expressed

Blast result AT3G08960 : 0.00E+00
Blast annotation: ARM repeat superfamily protein

2.Location

Scaffold: PH01001658
Strand: -

RegionStartEnd
gene272417284905
mRNA272417284905
exon272417273177
exon273272273356
exon273465273521
exon273608273714
exon274131274352
exon274461274520
exon274909275067
exon276065276169
exon276237276419
exon276922277014
exon277564277698
exon277793277867
exon277977278076
exon278358278518
exon278606278753
exon279496279698
exon281729281947
exon282332282473
exon282564282625
exon282717282789
exon283318283427
exon283746284905
CDS273013273177
CDS273272273356
CDS273465273521
CDS273608273714
CDS274131274352
CDS274461274520
CDS274909275067
CDS276065276169
CDS276237276419
CDS276922277014
CDS277564277698
CDS277793277867
CDS277977278076
CDS278358278518
CDS278606278753
CDS279496279698
CDS281729281947
CDS282332282473
CDS282564282625
CDS282717282789
CDS283318283427
CDS283746283886

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000613GH3 Glycoside_Hydrolases
apoplast,
nuclear pore,
integral to membrane,
manganese ion binding,
protein transporter activity,
nutrient reservoir activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03810.18IBN_N29101

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005488binding
GO:0005643nuclear pore
GO:0006886intracellular protein transport
GO:0008565protein transporter activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.