Annotation of co-expression genes

PH01001658G0400's details annotation

1.Annotation

ICBR annotation: ubiquitin-activating enzyme, putative, expressed

Blast result AT2G30110 : 0
Blast annotation: ubiquitin-activating enzyme 1

2.Location

Scaffold: PH01001658
Strand: -

RegionStartEnd
gene301702307627
mRNA301702307627
exon301702302902
exon303602304034
exon304456305324
exon305405306199
exon306397306614
exon306870307627
CDS302306302902
CDS303602304034
CDS304456305324
CDS305405306199
CDS306397306614
CDS306870306933

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00899.20ThiF2365
PF16190.4E1_FCCH164233
PF16191.4E1_4HB235304
PF00899.20ThiF386885
PF10585.8UBA_e1_thiolCys573826
PF09358.9E1_UFD897986

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Ubiquitin mediated proteolysisubiquitin-activating enzyme E1 [EC:6.3.2.19]ko04120K03178

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0005524ATP binding
GO:0006464cellular protein modification process
GO:0008641small protein activating enzyme activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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