PH01001659G0220's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result AT2G46280 : 1.00E-153
Blast annotation: TGF-beta receptor interacting protein 1
2.Location
Scaffold: PH01001659
Strand: -
| Region | Start | End |
| gene | 184034 | 188879 |
| mRNA | 184034 | 188879 |
| exon | 184034 | 184932 |
| exon | 185724 | 185803 |
| exon | 185891 | 185977 |
| exon | 186592 | 186681 |
| exon | 186781 | 186900 |
| exon | 187444 | 187571 |
| exon | 187660 | 188879 |
| CDS | 184860 | 184932 |
| CDS | 185724 | 185803 |
| CDS | 185891 | 185977 |
| CDS | 186592 | 186681 |
| CDS | 186781 | 186900 |
| CDS | 187444 | 187571 |
| CDS | 187660 | 187714 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 43 | 80 |
| PF00400.31 | WD40 | 149 | 174 |
| PF00400.31 | WD40 | 188 | 219 |
| PF00400.31 | WD40 | 283 | 314 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA transport | translation initiation factor 3 subunit I | ko03013 | K03246 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003743 | translation initiation factor activity |
| GO:0005515 | protein binding |
| GO:0005737 | cytoplasm |
| GO:0005852 | eukaryotic translation initiation factor 3 complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.