PH01001659G0290's details annotation
1.Annotation
ICBR annotation: thioredoxin domain-containing protein 9, putative, expressed
Blast result AT3G50960 : 2.90E-50
Blast annotation: phosducin-like protein 3 homolog
2.Location
Scaffold: PH01001659
Strand: -
| Region | Start | End |
| gene | 219441 | 223376 |
| mRNA | 219441 | 223376 |
| exon | 219441 | 220867 |
| exon | 221022 | 221083 |
| exon | 221365 | 221466 |
| exon | 221551 | 221598 |
| exon | 221686 | 221760 |
| exon | 223027 | 223376 |
| CDS | 220576 | 220867 |
| CDS | 221022 | 221083 |
| CDS | 221365 | 221466 |
| CDS | 221551 | 221598 |
| CDS | 221686 | 221760 |
| CDS | 223027 | 223110 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000048 | |
| coexpression network | CFinderM000186 | acid-amino acid ligase activity, |
| coexpression network | CFinderM001030 | protein import into mitochondrial inner membrane, RLK-Pelle_L-LEC (from iTAK) protein methylation, |
| coexpression network | CFinderM001332 | protein import into mitochondrial inner membrane, mitochondrial electron transport, ubiquinol to cytochrome c, ubiquinol-cytochrome-c reductase activity, mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), ATP synthesis coupled proton transport, hydrogen ion transmembrane transporter activity, |
| coexpression network | CFinderM001470 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis transcription factor TFIIF complex, transcription from RNA polymerase II promoter, transcription initiation from RNA polymerase II promoter, L-phenylalanine biosynthetic process, Basal_transcription_factors prephenate dehydratase activity, |
| coexpression network | CFinderM001551 | carbohydrate phosphorylation, galactokinase activity, galactose metabolic process, kinase activity, |
| coexpression network | CFinderM001771 | Terpenoid_backbone_biosynthesis isoprenoid biosynthetic process, regulation of Rab GTPase activity, Rab GTPase activator activity, acid-amino acid ligase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.