Annotation of co-expression genes

PH01001677G0320's details annotation

1.Annotation

ICBR annotation: cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed

Blast result AT1G80230 : 2.10E-40
Blast annotation: Rubredoxin-like superfamily protein

2.Location

Scaffold: PH01001677
Strand: +

RegionStartEnd
gene205217207764
mRNA205217207764
exon205217205549
exon205633205718
exon205829205879
exon206592206656
exon207152207764
CDS205414205549
CDS205633205718
CDS205829205879
CDS206592206656
CDS207152207554

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000166Ribosome
translation,
Ribosome
structural constituent of ribosome,
intracellular,
mitochondrial envelope,
cytochrome-c oxidase activity,
polysaccharide_binding
ubiquitin thiolesterase activity,
Oxidative_phosphorylation
ubiquitin-dependent protein catabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01215.18COX5B60153

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Oxidative phosphorylationcytochrome c oxidase subunit 5b[EC:1.9.3.1]ko00190K02265

10.Gene Ontology

GO AccessionGO Annotation
GO:0004129cytochrome-c oxidase activity
GO:0005740mitochondrial envelope

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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