PH01001679G0320's details annotation
1.Annotation
ICBR annotation: ZAC, putative, expressed
Blast result AT4G21160 : 2.00E-113
Blast annotation: Calcium-dependent ARF-type GTPase activating protein family
2.Location
Scaffold: PH01001679
Strand: -
| Region | Start | End |
| gene | 200470 | 203706 |
| mRNA | 200470 | 203706 |
| exon | 200470 | 201009 |
| exon | 201937 | 202032 |
| exon | 202127 | 202291 |
| exon | 202422 | 202551 |
| exon | 202634 | 202797 |
| exon | 202959 | 203034 |
| exon | 203331 | 203415 |
| exon | 203531 | 203706 |
| CDS | 200728 | 201009 |
| CDS | 201937 | 202032 |
| CDS | 202127 | 202291 |
| CDS | 202422 | 202551 |
| CDS | 202634 | 202797 |
| CDS | 202959 | 203034 |
| CDS | 203331 | 203415 |
| CDS | 203531 | 203582 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01412.17 | ArfGap | 22 | 136 |
| PF00168.29 | C2 | 193 | 280 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Endocytosis | stromal membrane-associated protein | ko04144 | K12486 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008060 | ARF GTPase activator activity |
| GO:0008270 | zinc ion binding |
| GO:0032312 | regulation of ARF GTPase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.