PH01001679G0360's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result AT3G13300 : 0.00E+00
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01001679
Strand: -
| Region | Start | End |
| gene | 238436 | 249917 |
| mRNA | 238436 | 249917 |
| exon | 238436 | 238509 |
| exon | 239115 | 239513 |
| exon | 239922 | 240215 |
| exon | 240301 | 240426 |
| exon | 240670 | 240816 |
| exon | 240899 | 240904 |
| exon | 240950 | 241120 |
| exon | 241325 | 241444 |
| exon | 241520 | 241879 |
| exon | 243443 | 244347 |
| exon | 244423 | 244990 |
| exon | 245485 | 245613 |
| exon | 246267 | 246485 |
| exon | 246572 | 246728 |
| exon | 246947 | 246996 |
| exon | 247697 | 249917 |
| CDS | 238453 | 238509 |
| CDS | 239115 | 239513 |
| CDS | 239922 | 240215 |
| CDS | 240301 | 240426 |
| CDS | 240670 | 240816 |
| CDS | 240899 | 240904 |
| CDS | 240950 | 241120 |
| CDS | 241325 | 241444 |
| CDS | 241520 | 241879 |
| CDS | 243443 | 244347 |
| CDS | 244423 | 244990 |
| CDS | 245485 | 245613 |
| CDS | 246267 | 246485 |
| CDS | 246572 | 246728 |
| CDS | 246947 | 246996 |
| CDS | 247697 | 248200 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000535 | GT37 GlycosylTransferases CMGC_MAPK (from iTAK) |
| coexpression network | CFinderM001258 | proteasome complex, regulation of protein catabolic process, enzyme regulator activity, Proteasome RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16529.4 | Ge1_WD40 | 115 | 426 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA degradation | enhancer of mRNA-decapping protein 4 | ko03018 | K12616 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.