PH01001683G0080's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G02890 : 2.30E-42
Blast annotation: RING/FYVE/PHD zinc finger superfamily protein
2.Location
Scaffold: PH01001683
Strand: +
| Region | Start | End |
| gene | 55190 | 64768 |
| mRNA | 55190 | 64768 |
| exon | 55190 | 55828 |
| exon | 56233 | 56313 |
| exon | 57128 | 58246 |
| exon | 60042 | 60127 |
| exon | 60640 | 61433 |
| exon | 61540 | 61962 |
| exon | 62052 | 62751 |
| exon | 62829 | 63059 |
| exon | 63137 | 63261 |
| exon | 63336 | 63713 |
| exon | 63805 | 64768 |
| CDS | 55754 | 55828 |
| CDS | 56233 | 56313 |
| CDS | 57128 | 58246 |
| CDS | 60042 | 60127 |
| CDS | 60640 | 61433 |
| CDS | 61540 | 61962 |
| CDS | 62052 | 62751 |
| CDS | 62829 | 63059 |
| CDS | 63137 | 63261 |
| CDS | 63336 | 63713 |
| CDS | 63805 | 64523 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.