PH01001685G0420's details annotation
1.Annotation
ICBR annotation: lipase, putative, expressed
Blast result AT1G10740 : 5.00E-172
Blast annotation: alpha/beta-Hydrolases superfamily protein
2.Location
Scaffold: PH01001685
Strand: +
| Region | Start | End |
| gene | 260155 | 265617 |
| mRNA | 260155 | 265617 |
| exon | 260155 | 261043 |
| exon | 261899 | 262227 |
| exon | 262356 | 262450 |
| exon | 262649 | 262791 |
| exon | 262844 | 262944 |
| exon | 263431 | 263531 |
| exon | 263639 | 264076 |
| exon | 264201 | 264332 |
| exon | 264575 | 265617 |
| CDS | 260881 | 261043 |
| CDS | 261899 | 262227 |
| CDS | 262356 | 262450 |
| CDS | 262649 | 262791 |
| CDS | 262844 | 262944 |
| CDS | 263431 | 263531 |
| CDS | 263639 | 264076 |
| CDS | 264201 | 264332 |
| CDS | 264575 | 264734 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001414 | PHD Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001415 | PHD Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.