PH01001693G0200's details annotation
1.Annotation
ICBR annotation: tRNA pseudouridine synthase family protein, putative, expressed
Blast result AT1G09800 : 3.20E-45
Blast annotation: Pseudouridine synthase family protein
2.Location
Scaffold: PH01001693
Strand: -
| Region | Start | End |
| gene | 128881 | 132483 |
| mRNA | 128881 | 132483 |
| exon | 128881 | 129134 |
| exon | 129237 | 129297 |
| exon | 129613 | 129891 |
| exon | 130290 | 130343 |
| exon | 130780 | 130879 |
| exon | 131357 | 132483 |
| CDS | 129034 | 129134 |
| CDS | 129237 | 129297 |
| CDS | 129613 | 129891 |
| CDS | 130290 | 130343 |
| CDS | 130780 | 130879 |
| CDS | 131357 | 131712 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001399 | RNA_transport Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, Base_excision_repair |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01416.19 | PseudoU_synth_1 | 172 | 313 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0001522 | pseudouridine synthesis |
| GO:0003723 | RNA binding |
| GO:0009451 | RNA modification |
| GO:0009982 | pseudouridine synthase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.