PH01001732G0120's details annotation
1.Annotation
ICBR annotation: SHR5-receptor-like kinase, putative
Blast result AT1G56145 : 2.00E-170
Blast annotation: Leucine-rich repeat transmembrane protein kinase
2.Location
Scaffold: PH01001732
Strand: +
| Region | Start | End |
| gene | 96094 | 104746 |
| mRNA | 96094 | 104746 |
| exon | 96094 | 96312 |
| exon | 96962 | 97148 |
| exon | 97725 | 97796 |
| exon | 99843 | 99914 |
| exon | 100417 | 100491 |
| exon | 101224 | 101289 |
| exon | 101428 | 101472 |
| exon | 101562 | 101626 |
| exon | 101720 | 102099 |
| exon | 102266 | 102692 |
| exon | 102835 | 102953 |
| exon | 103199 | 103409 |
| exon | 103505 | 103737 |
| exon | 103844 | 103975 |
| exon | 104079 | 104482 |
| exon | 104715 | 104746 |
| CDS | 96243 | 96312 |
| CDS | 96962 | 97148 |
| CDS | 97725 | 97796 |
| CDS | 99843 | 99914 |
| CDS | 100417 | 100491 |
| CDS | 101224 | 101289 |
| CDS | 101428 | 101472 |
| CDS | 101562 | 101626 |
| CDS | 101720 | 102099 |
| CDS | 102266 | 102692 |
| CDS | 102835 | 102953 |
| CDS | 103199 | 103409 |
| CDS | 103505 | 103737 |
| CDS | 103844 | 103975 |
| CDS | 104079 | 104482 |
| CDS | 104715 | 104724 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000016 | protein phosphorylation, protein kinase activity, transferase activity, transferring phosphorus-containing groups, protein serine/threonine kinase activity, ATP binding, RLK-Pelle_LRR-XII-1 (from iTAK) RLK-Pelle_DLSV (from iTAK) RLK-Pelle_WAK (from iTAK) ADP_binding polysaccharide_binding transmembrane_transporter_activity WRKY Transcription_Regulator(from PlantTFDB) recognition of pollen, transmembrane transport, defense response, RLK-Pelle_L-LEC (from iTAK) membrane, integral to membrane, RLK-Pelle_SD-2b (from iTAK) RLK-Pelle_WAK_LRK10L-1 (from iTAK) ATPase activity, substrate-specific transmembrane transporter activity, RLK-Pelle_LRR-XI-1 (from iTAK) 6-phosphofructokinase complex, |
| coexpression network | CFinderM000288 | RLK-Pelle_DLSV (from iTAK) protein serine/threonine kinase activity, transferase activity, transferring phosphorus-containing groups, protein kinase activity, protein phosphorylation, ATP binding, GH17 Glycoside_Hydrolases RLK-Pelle_SD-2b (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF11721.7 | Malectin | 220 | 406 |
| PF07714.16 | Pkinase_Tyr | 514 | 772 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.