PH01001758G0120's details annotation
1.Annotation
ICBR annotation: emp24/gp25L/p24 family protein, putative, expressed
Blast result AT3G22845 : 4.40E-47
Blast annotation: emp24/gp25L/p24 family/GOLD family protein
2.Location
Scaffold: PH01001758
Strand: +
| Region | Start | End |
| gene | 84121 | 87002 |
| mRNA | 84121 | 87002 |
| exon | 84121 | 84811 |
| exon | 85473 | 85659 |
| exon | 85818 | 85925 |
| exon | 86109 | 86291 |
| exon | 86698 | 87002 |
| CDS | 84284 | 84811 |
| CDS | 85473 | 85659 |
| CDS | 85818 | 85925 |
| CDS | 86109 | 86291 |
| CDS | 86698 | 86831 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01105.23 | EMP24_GP25L | 174 | 275 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006810 | transport |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.