PH01001758G0190's details annotation
1.Annotation
ICBR annotation: stem-specific protein TSJT1, putative, expressed
Blast result AT5G43830 : 1.10E-85
Blast annotation: Aluminium induced protein with YGL and LRDR motifs
2.Location
Scaffold: PH01001758
Strand: +
| Region | Start | End |
| gene | 150838 | 154110 |
| mRNA | 150838 | 154110 |
| exon | 150838 | 151040 |
| exon | 151375 | 151598 |
| exon | 152581 | 152660 |
| exon | 152852 | 153092 |
| exon | 153482 | 153602 |
| exon | 153721 | 154110 |
| CDS | 150968 | 151040 |
| CDS | 151375 | 151598 |
| CDS | 152581 | 152660 |
| CDS | 152852 | 153092 |
| CDS | 153482 | 153602 |
| CDS | 153721 | 153908 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12481.7 | DUF3700 | 2 | 228 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.