PH01001761G0300's details annotation
1.Annotation
ICBR annotation: initiator-binding protein, putative, expressed
Blast result AT1G07540 : 2.60E-74
Blast annotation: TRF-like 2
2.Location
Scaffold: PH01001761
Strand: -
| Region | Start | End |
| gene | 185399 | 191112 |
| mRNA | 185399 | 191112 |
| exon | 185399 | 186123 |
| exon | 186795 | 186858 |
| exon | 186946 | 186967 |
| exon | 187042 | 187301 |
| exon | 187381 | 187625 |
| exon | 187749 | 187828 |
| exon | 187914 | 187967 |
| exon | 188051 | 188242 |
| exon | 188350 | 189196 |
| exon | 189292 | 191112 |
| CDS | 185947 | 186123 |
| CDS | 186795 | 186858 |
| CDS | 186946 | 186967 |
| CDS | 187042 | 187301 |
| CDS | 187381 | 187625 |
| CDS | 187749 | 187828 |
| CDS | 187914 | 187967 |
| CDS | 188051 | 188242 |
| CDS | 188350 | 189196 |
| CDS | 189292 | 189381 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.