PH01001765G0020's details annotation
1.Annotation
ICBR annotation: stripe rust resistance protein Yr10, putative, expressed
Blast result AT1G50180 : 1.60E-67
Blast annotation: NB-ARC domain-containing disease resistance protein
2.Location
Scaffold: PH01001765
Strand: +
| Region | Start | End |
| gene | 39372 | 47617 |
| mRNA | 39372 | 47617 |
| exon | 39372 | 41090 |
| exon | 42202 | 44158 |
| exon | 45264 | 45869 |
| exon | 45900 | 45992 |
| exon | 46024 | 46112 |
| exon | 46341 | 47617 |
| CDS | 40279 | 41090 |
| CDS | 42202 | 44158 |
| CDS | 45264 | 45869 |
| CDS | 45900 | 45992 |
| CDS | 46024 | 46112 |
| CDS | 46341 | 46461 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00931.21 | NB-ARC | 175 | 456 |
| PF01535.19 | PPR | 1079 | 1107 |
| PF01535.19 | PPR | 1111 | 1126 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006952 | defense response |
| GO:0043531 | ADP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.