PH01001765G0140's details annotation
1.Annotation
ICBR annotation: stripe rust resistance protein Yr10, putative, expressed
Blast result AT1G50180 : 5.60E-68
Blast annotation: NB-ARC domain-containing disease resistance protein
2.Location
Scaffold: PH01001765
Strand: +
| Region | Start | End |
| gene | 124336 | 133464 |
| mRNA | 124336 | 133464 |
| exon | 124336 | 125220 |
| exon | 126343 | 126370 |
| exon | 128089 | 129446 |
| exon | 130274 | 130334 |
| exon | 132895 | 133464 |
| CDS | 124409 | 125220 |
| CDS | 126343 | 126370 |
| CDS | 128089 | 129446 |
| CDS | 130274 | 130334 |
| CDS | 132895 | 132978 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000329 | extracellular ligand-gated ion channel activity, postsynaptic membrane, defense response, ion transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00931.21 | NB-ARC | 175 | 492 |
| PF13855.5 | LRR_8 | 629 | 683 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005230 | extracellular ligand-gated ion channel activity |
| GO:0006811 | ion transport |
| GO:0006952 | defense response |
| GO:0016021 | integral to membrane |
| GO:0043531 | ADP binding |
| GO:0045211 | postsynaptic membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.