Annotation of co-expression genes

PH01001782G0310's details annotation

1.Annotation

ICBR annotation: TKL_IRAK_DUF26-lf.3 - DUF26 kinases have homology to DUF26 containing loci, expressed

Blast result AT1G70520 : 1.00E-141
Blast annotation: cysteine-rich RLK (RECEPTOR-like protein kinase) 2

2.Location

Scaffold: PH01001782
Strand: +

RegionStartEnd
gene206819210041
mRNA206819210041
exon206819207712
exon208056208169
exon208260208399
exon208532208742
exon208834209068
exon209193209346
exon209439209767
exon209832210041
CDS206920207712
CDS208056208169
CDS208260208399
CDS208532208742
CDS208834209068
CDS209193209346
CDS209439209767
CDS209832209850

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000084cell wall macromolecule catabolic process,
chitin catabolic process,
WRKY Transcription_Regulator(from PlantTFDB)
defense response to fungus,
ammonium_transport
ammonium_transmembrane_transport
defense response to bacterium,
metabolic process,
chitinase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01657.16Stress-antifung51134
PF01657.16Stress-antifung152249
PF07714.16Pkinase_Tyr336604

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.