Gene details

Annotation of co-expression genes

PH01001785G0060's details annotation

1.Annotation

ICBR annotation: DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative, expressed

Blast result AT3G59600 : 1.40E-51
Blast annotation: RNA polymerase Rpb8

2.Location

Scaffold: PH01001785
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000592	transcription, DNA-dependent, cytoplasm,
coexpression network	CFinderM001267	sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity, protein binding, myosin complex, motor activity, pentose-phosphate shunt, RNA_polymerase transcription, DNA-dependent, Pyrimidine_metabolism Purine_metabolism

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
Purine metabolism	DNA-directed RNA polymerases I, II, and III subunit RPABC	ko00230	K03016
Pyrimidine metabolism	DNA-directed RNA polymerases I, II, and III subunit RPABC	ko00240	K03016
RNA polymerase	DNA-directed RNA polymerases I, II, and III subunit RPABC	ko03020	K03016

10.Gene Ontology

GO Accession	GO Annotation
GO:0006351	transcription, DNA-dependent

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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