PH01001798G0110's details annotation
1.Annotation
ICBR annotation: skp1 family, tetramerisation domain containing protein, expressed
Blast result AT5G59140 : 4.50E-26
Blast annotation: BTB/POZ domain-containing protein
2.Location
Scaffold: PH01001798
Strand: -
| Region | Start | End |
| gene | 62806 | 65359 |
| mRNA | 62806 | 65359 |
| exon | 62806 | 63147 |
| exon | 63296 | 65359 |
| CDS | 62978 | 63147 |
| CDS | 63296 | 63476 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03931.14 | Skp1_POZ | 29 | 89 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ubiquitin mediated proteolysis | transcription elongation factor B, polypeptide 1 | ko04120 | K03872 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006511 | ubiquitin-dependent protein catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.