PH01001799G0080's details annotation
1.Annotation
ICBR annotation: Dicer, putative, expressed
Blast result AT3G03300 : 1.50E-43
Blast annotation: dicer-like 2
2.Location
Scaffold: PH01001799
Strand: -
| Region | Start | End |
| gene | 39819 | 45206 |
| mRNA | 39819 | 45206 |
| exon | 39819 | 40093 |
| exon | 40937 | 41213 |
| exon | 41968 | 42246 |
| exon | 42996 | 43003 |
| exon | 44070 | 44260 |
| exon | 44360 | 45206 |
| CDS | 39942 | 40093 |
| CDS | 40937 | 41213 |
| CDS | 41968 | 42246 |
| CDS | 42996 | 43003 |
| CDS | 44070 | 44260 |
| CDS | 44360 | 44595 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00636.25 | Ribonuclease_3 | 145 | 255 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0004525 | ribonuclease III activity |
| GO:0006396 | RNA processing |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.