Annotation of co-expression genes

PH01001808G0030's details annotation

1.Annotation

ICBR annotation: PHD finger family protein, putative, expressed

Blast result AT1G05380 : 2.90E-98
Blast annotation: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein

2.Location

Scaffold: PH01001808
Strand: +

RegionStartEnd
gene1095516503
mRNA1095516503
exon1095514759
exon1496515097
exon1524915337
exon1607116503
CDS1159214759
CDS1496515097
CDS1524915337
CDS1607116313

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001410PHD Transcription_Regulator(from iTAK)
mediator complex,
proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
SNF2 Transcription_Regulator(from iTAK)
regulation of transcription from RNA polymerase II promoter,
ATP hydrolysis coupled proton transport,
RNA metabolic process,
zinc ion binding,
protein binding,
RNA_polymerase_II_transcription_cofactor_activity
N-acetyltransferase_activity
hydrogen ion transmembrane transporter activity,
DNA binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)PHD

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF16135.4Jas914986
PF00628.28PHD10291071

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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