PH01001808G0290's details annotation
1.Annotation
ICBR annotation: nuclear prelamin A recognition factor, putative, expressed
Blast result AT4G16440 : 0.00E+00
Blast annotation: ferredoxin hydrogenases
2.Location
Scaffold: PH01001808
Strand: -
| Region | Start | End |
| gene | 175868 | 181595 |
| mRNA | 175868 | 181595 |
| exon | 175868 | 176329 |
| exon | 176887 | 176978 |
| exon | 177082 | 177208 |
| exon | 177318 | 177489 |
| exon | 177792 | 177841 |
| exon | 177926 | 178076 |
| exon | 178525 | 178651 |
| exon | 178847 | 179033 |
| exon | 179204 | 179357 |
| exon | 179451 | 179533 |
| exon | 181209 | 181595 |
| CDS | 176087 | 176329 |
| CDS | 176887 | 176978 |
| CDS | 177082 | 177208 |
| CDS | 177318 | 177489 |
| CDS | 177792 | 177841 |
| CDS | 177926 | 178076 |
| CDS | 178525 | 178651 |
| CDS | 178847 | 179033 |
| CDS | 179204 | 179357 |
| CDS | 179451 | 179533 |
| CDS | 181209 | 181325 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02906.13 | Fe_hyd_lg_C | 94 | 395 |
| PF02256.16 | Fe_hyd_SSU | 453 | 488 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.