PH01001819G0370's details annotation
1.Annotation
ICBR annotation: ZOS9-03 - C2H2 zinc finger protein, expressed
Blast result AT5G51230 : 1.60E-59
Blast annotation: VEFS-Box of polycomb protein
2.Location
Scaffold: PH01001819
Strand: -
| Region | Start | End |
| gene | 260513 | 267410 |
| mRNA | 260513 | 267410 |
| exon | 260513 | 261729 |
| exon | 261882 | 262034 |
| exon | 262558 | 262637 |
| exon | 262771 | 262854 |
| exon | 264591 | 264650 |
| exon | 264986 | 265034 |
| exon | 265152 | 265278 |
| exon | 265869 | 266005 |
| exon | 266077 | 266123 |
| exon | 266528 | 266587 |
| exon | 267209 | 267410 |
| CDS | 261606 | 261729 |
| CDS | 261882 | 262034 |
| CDS | 262558 | 262637 |
| CDS | 262771 | 262854 |
| CDS | 264591 | 264650 |
| CDS | 264986 | 265034 |
| CDS | 265152 | 265278 |
| CDS | 265869 | 266005 |
| CDS | 266077 | 266123 |
| CDS | 266528 | 266587 |
| CDS | 267209 | 267235 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09733.8 | VEFS-Box | 170 | 225 |
| PF09733.8 | VEFS-Box | 244 | 300 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.