PH01001822G0200's details annotation
1.Annotation
ICBR annotation: heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed
Blast result AT5G47900 : 3.30E-86
Blast annotation: Protein of unknown function (DUF1624)
2.Location
Scaffold: PH01001822
Strand: +
| Region | Start | End |
| gene | 156558 | 167006 |
| mRNA | 156558 | 167006 |
| exon | 156558 | 157120 |
| exon | 158492 | 158553 |
| exon | 159893 | 159967 |
| exon | 161078 | 161295 |
| exon | 161665 | 161887 |
| exon | 162652 | 162743 |
| exon | 163164 | 163254 |
| exon | 164089 | 164204 |
| exon | 164448 | 164559 |
| exon | 164689 | 164805 |
| exon | 164890 | 165029 |
| exon | 165449 | 165515 |
| exon | 165609 | 165687 |
| exon | 165792 | 165883 |
| exon | 166302 | 166334 |
| exon | 166527 | 166631 |
| exon | 166794 | 167006 |
| CDS | 157018 | 157120 |
| CDS | 158492 | 158553 |
| CDS | 159893 | 159967 |
| CDS | 161078 | 161295 |
| CDS | 161665 | 161887 |
| CDS | 162652 | 162743 |
| CDS | 163164 | 163254 |
| CDS | 164089 | 164204 |
| CDS | 164448 | 164559 |
| CDS | 164689 | 164805 |
| CDS | 164890 | 165029 |
| CDS | 165449 | 165515 |
| CDS | 165609 | 165687 |
| CDS | 165792 | 165883 |
| CDS | 166302 | 166334 |
| CDS | 166527 | 166631 |
| CDS | 166794 | 166820 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000016 | protein phosphorylation, protein kinase activity, transferase activity, transferring phosphorus-containing groups, protein serine/threonine kinase activity, ATP binding, RLK-Pelle_LRR-XII-1 (from iTAK) RLK-Pelle_DLSV (from iTAK) RLK-Pelle_WAK (from iTAK) ADP_binding polysaccharide_binding transmembrane_transporter_activity WRKY Transcription_Regulator(from PlantTFDB) recognition of pollen, transmembrane transport, defense response, RLK-Pelle_L-LEC (from iTAK) membrane, integral to membrane, RLK-Pelle_SD-2b (from iTAK) RLK-Pelle_WAK_LRK10L-1 (from iTAK) ATPase activity, substrate-specific transmembrane transporter activity, RLK-Pelle_LRR-XI-1 (from iTAK) 6-phosphofructokinase complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.