Annotation of co-expression genes

PH01001829G0270's details annotation

1.Annotation

ICBR annotation: transcriptional corepressor LEUNIG, putative, expressed

Blast result AT4G32551 : 4.50E-99
Blast annotation: LisH dimerisation motif;WD40/YVTN repeat-like-containing domain

2.Location

Scaffold: PH01001829
Strand: -

RegionStartEnd
gene173180180150
mRNA173180180150
exon173180174778
exon175261175341
exon175686175802
exon177223177372
exon177500177609
exon177960178074
exon178216178461
exon178962179270
exon179388179437
exon179881180150
CDS174638174778
CDS175261175341
CDS175686175802
CDS177223177372
CDS177500177609
CDS177960178074
CDS178216178461
CDS178962179270
CDS179388179437
CDS179881179992

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00400.31WD40292318
PF00400.31WD40327361
PF00400.31WD40397428
PF00400.31WD40442476

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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