Annotation of co-expression genes

PH01001835G0290's details annotation

1.Annotation

ICBR annotation: transketolase, putative, expressed

Blast result AT1G55510 : 5.80E-73
Blast annotation: branched-chain alpha-keto acid decarboxylase E1 beta subunit

2.Location

Scaffold: PH01001835
Strand: -

RegionStartEnd
gene230499239754
mRNA230499239754
exon230499230691
exon230760230846
exon230962231039
exon231110231205
exon234431235000
exon235519235605
exon236248236345
exon236426236483
exon236863236922
exon237464237499
exon237690237801
exon238636239754
CDS230656230691
CDS230760230846
CDS230962231039
CDS231110231205
CDS234431235000
CDS235519235605
CDS236248236345
CDS236426236483
CDS236863236922
CDS237464237499
CDS237690237801
CDS238636238814

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02779.23Transket_pyr41184
PF02780.19Transketolase_C394488

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
284 Valine, leucine and isoleucine degradation2-oxoisovalerate dehydrogenase E1 component, beta subunit[EC:1.2.4.4]K00167

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0008152metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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