PH01001840G0090's details annotation
1.Annotation
ICBR annotation: WD repeat-containing protein, putative, expressed
Blast result AT5G08560 : 0.00E+00
Blast annotation: transducin family protein / WD-40 repeat family protein
2.Location
Scaffold: PH01001840
Strand: +
| Region | Start | End |
| gene | 89890 | 95297 |
| mRNA | 89890 | 95297 |
| exon | 89890 | 90711 |
| exon | 91543 | 91644 |
| exon | 92520 | 93149 |
| exon | 93888 | 95297 |
| CDS | 90037 | 90711 |
| CDS | 91543 | 91644 |
| CDS | 92520 | 93149 |
| CDS | 93888 | 94148 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000774 | GH47 Glycoside_Hydrolases membrane, ion transport, cellular process, Protein_processing_in_endoplasmic_reticulum |
| coexpression network | CFinderM000786 | TKL_CTR1-DRK-2 (from iTAK) ATP phosphoribosyltransferase activity, histidine biosynthetic process, RNA-dependent DNA replication, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 223 | 259 |
| PF00400.31 | WD40 | 269 | 304 |
| PF00400.31 | WD40 | 308 | 346 |
| PF00400.31 | WD40 | 438 | 473 |
| PF00400.31 | WD40 | 479 | 516 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.