PH01001851G0060's details annotation
1.Annotation
ICBR annotation: oxysterol-binding protein, putative, expressed
Blast result AT1G13170 : 1.60E-33
Blast annotation: OSBP(oxysterol binding protein)-related protein 1D
2.Location
Scaffold: PH01001851
Strand: -
| Region | Start | End |
| gene | 37306 | 39614 |
| mRNA | 37306 | 39614 |
| exon | 37306 | 38078 |
| exon | 38360 | 38448 |
| exon | 38795 | 39614 |
| CDS | 37704 | 38078 |
| CDS | 38360 | 38448 |
| CDS | 38795 | 38921 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001089 | clathrin_coat_assembly clathrin_coat clathrin_binding 1-phosphatidylinositol_binding phospholipid binding, |
| coexpression network | CFinderM001162 | clathrin_coat_assembly clathrin_coat RLK-Pelle_SD-2b (from iTAK) |
| coexpression network | CFinderM001862 | clathrin_coat clathrin_coat_assembly 1-phosphatidylinositol_binding clathrin_binding cellular metabolic process, phospholipid binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF15413.5 | PH_11 | 69 | 111 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.