PH01001870G0450's details annotation
1.Annotation
ICBR annotation: OsCML22 - Calmodulin-related calcium sensor protein, expressed
Blast result AT2G43290 : 1.30E-51
Blast annotation: Calcium-binding EF-hand family protein
2.Location
Scaffold: PH01001870
Strand: -
| Region | Start | End |
| gene | 279806 | 281047 |
| mRNA | 279806 | 281047 |
| exon | 279806 | 281047 |
| CDS | 280268 | 280954 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000342 | ERF Transcription_Regulator(from PlantTFDB) AP2/ERF-ERF Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13499.5 | EF-hand_7 | 89 | 151 |
| PF13499.5 | EF-hand_7 | 167 | 232 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005509 | calcium ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.