PH01001879G0250's details annotation
1.Annotation
ICBR annotation: chaperone protein dnaJ, putative, expressed
Blast result AT4G39960 : 5.00E-155
Blast annotation: Molecular chaperone Hsp40/DnaJ family protein
2.Location
Scaffold: PH01001879
Strand: +
| Region | Start | End |
| gene | 196598 | 201372 |
| mRNA | 196598 | 201372 |
| exon | 196598 | 198107 |
| exon | 198420 | 198558 |
| exon | 198651 | 198708 |
| exon | 198992 | 199034 |
| exon | 199438 | 199486 |
| exon | 199593 | 199673 |
| exon | 199763 | 201372 |
| CDS | 197980 | 198107 |
| CDS | 198420 | 198558 |
| CDS | 198651 | 198708 |
| CDS | 198992 | 199034 |
| CDS | 199438 | 199486 |
| CDS | 199593 | 199673 |
| CDS | 199763 | 200608 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00226.30 | DnaJ | 90 | 151 |
| PF01556.17 | DnaJ_C | 205 | 420 |
| PF00684.18 | DnaJ_CXXCXGXG | 230 | 293 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
| GO:0006457 | protein folding |
| GO:0009408 | response to heat |
| GO:0031072 | heat shock protein binding |
| GO:0051082 | unfolded protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.