PH01001880G0470's details annotation
1.Annotation
ICBR annotation: chloroplast unusual positioning protein, putative, expressed
Blast result AT4G18570 : 1.20E-90
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01001880
Strand: -
| Region | Start | End |
| gene | 274235 | 282727 |
| mRNA | 274235 | 282727 |
| exon | 274235 | 275997 |
| exon | 276078 | 276212 |
| exon | 277973 | 278092 |
| exon | 278221 | 278332 |
| exon | 278428 | 278609 |
| exon | 278720 | 278800 |
| exon | 278866 | 278955 |
| exon | 279586 | 279627 |
| exon | 280197 | 282727 |
| CDS | 275866 | 275997 |
| CDS | 276078 | 276212 |
| CDS | 277973 | 278092 |
| CDS | 278221 | 278332 |
| CDS | 278428 | 278609 |
| CDS | 278720 | 278800 |
| CDS | 278866 | 278955 |
| CDS | 279586 | 279627 |
| CDS | 280197 | 281360 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000689 | hydrolase activity, acting on ester bonds, lipid metabolic process, hydrolase activity, RLK-Pelle_Extensin (from iTAK) lipase activity, lipid transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.