PH01001899G0080's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G31080 : 2.80E-42
Blast annotation: Protein of unknown function (DUF2296)
2.Location
Scaffold: PH01001899
Strand: -
| Region | Start | End |
| gene | 57866 | 68022 |
| mRNA | 57866 | 68022 |
| exon | 57866 | 59283 |
| exon | 59377 | 59850 |
| exon | 59926 | 60334 |
| exon | 64999 | 65100 |
| exon | 65523 | 65588 |
| exon | 65724 | 65825 |
| exon | 67307 | 67354 |
| exon | 67740 | 68022 |
| CDS | 58904 | 59283 |
| CDS | 59377 | 59850 |
| CDS | 59926 | 60334 |
| CDS | 64999 | 65100 |
| CDS | 65523 | 65588 |
| CDS | 65724 | 65825 |
| CDS | 67307 | 67354 |
| CDS | 67740 | 67865 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10058.8 | zinc_ribbon_10 | 256 | 306 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.