Annotation of co-expression genes

PH01001920G0160's details annotation

1.Annotation

ICBR annotation: receptor-like protein kinase, putative

Blast result AT2G19130 : 1.00E-153
Blast annotation: S-locus lectin protein kinase family protein

2.Location

Scaffold: PH01001920
Strand: -

RegionStartEnd
gene151489159728
mRNA151489159728
exon151489155368
exon155452155502
exon157625157789
exon159284159728
CDS153065155368
CDS155452155502
CDS157625157789
CDS159284159322

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000084cell wall macromolecule catabolic process,
chitin catabolic process,
WRKY Transcription_Regulator(from PlantTFDB)
defense response to fungus,
ammonium_transport
ammonium_transmembrane_transport
defense response to bacterium,
metabolic process,
chitinase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01453.23B_lectin181268
PF00954.19S_locus_glycop337392
PF08276.10PAN_2419475
PF00069.24Pkinase556819

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups
GO:0048544recognition of pollen

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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