PH01001932G0190's details annotation
1.Annotation
ICBR annotation: mitochondrial carrier protein, putative, expressed
Blast result AT1G79900 : 2.00E-103
Blast annotation: Mitochondrial substrate carrier family protein
2.Location
Scaffold: PH01001932
Strand: -
| Region | Start | End |
| gene | 140190 | 146866 |
| mRNA | 140190 | 146866 |
| exon | 140190 | 141452 |
| exon | 145271 | 146866 |
| CDS | 140766 | 141452 |
| CDS | 145271 | 145540 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000466 | |
| coexpression network | CFinderM001321 | GT66 GlycosylTransferases peroxisome_fission phenylalanyl-tRNA aminoacylation, integral_component_of_peroxisomal_membrane SAGA-type_complex tRNA aminoacylation, oligosaccharyl transferase activity, phenylalanine-tRNA ligase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00153.26 | Mito_carr | 11 | 106 |
| PF00153.26 | Mito_carr | 116 | 208 |
| PF00153.26 | Mito_carr | 218 | 308 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.