Annotation of co-expression genes

PH01001941G0050's details annotation

1.Annotation

ICBR annotation: GTP-binding protein, putative, expressed

Blast result AT1G30580 : 2.10E-93
Blast annotation: GTP binding

2.Location

Scaffold: PH01001941
Strand: -

RegionStartEnd
gene2792349773
mRNA2792349773
exon2792328731
exon2999630051
exon3047330599
exon3139431528
exon3224132312
exon3294533074
exon3313533295
exon3397134026
exon3413234209
exon3430234481
exon4310443217
exon4337643474
exon4356843659
exon4425144374
exon4446244629
exon4549345902
exon4945549536
exon4965149773
CDS2806828731
CDS2999630051
CDS3047330599
CDS3139431528
CDS3224132312
CDS3294533074
CDS3313533295
CDS3397134026
CDS3413234209
CDS3430234481
CDS4310443217
CDS4337643474
CDS4356843659
CDS4425144374
CDS4446244629
CDS4549345902
CDS4945549536
CDS4965149692

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01926.22MMR_HSR1179293
PF01661.20Macro432514

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005525GTP binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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