PH01001957G0040's details annotation
1.Annotation
ICBR annotation: vesicle-associated membrane protein, putative, expressed
Blast result AT4G15780 : 3.20E-80
Blast annotation: vesicle-associated membrane protein 724
2.Location
Scaffold: PH01001957
Strand: +
| Region | Start | End |
| gene | 19151 | 27266 |
| mRNA | 19151 | 27266 |
| exon | 19151 | 25105 |
| exon | 26089 | 26230 |
| exon | 26325 | 26445 |
| exon | 26559 | 26621 |
| exon | 26702 | 27266 |
| CDS | 24847 | 25105 |
| CDS | 26089 | 26230 |
| CDS | 26325 | 26445 |
| CDS | 26559 | 26621 |
| CDS | 26702 | 26854 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000016 | protein phosphorylation, protein kinase activity, transferase activity, transferring phosphorus-containing groups, protein serine/threonine kinase activity, ATP binding, RLK-Pelle_LRR-XII-1 (from iTAK) RLK-Pelle_DLSV (from iTAK) RLK-Pelle_WAK (from iTAK) ADP_binding polysaccharide_binding transmembrane_transporter_activity WRKY Transcription_Regulator(from PlantTFDB) recognition of pollen, transmembrane transport, defense response, RLK-Pelle_L-LEC (from iTAK) membrane, integral to membrane, RLK-Pelle_SD-2b (from iTAK) RLK-Pelle_WAK_LRK10L-1 (from iTAK) ATPase activity, substrate-specific transmembrane transporter activity, RLK-Pelle_LRR-XI-1 (from iTAK) 6-phosphofructokinase complex, |
| coexpression network | CFinderM001562 | HB-KNOX Transcription_Regulator(from iTAK) sterol_24-C-methyltransferase_activity TALE Transcription_Regulator(from PlantTFDB) SNARE_interactions_in_vesicular_transport Steroid_biosynthesis MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) Ascorbate_and_aldarate_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13774.5 | Longin | 48 | 129 |
| PF00957.20 | Synaptobrevin | 152 | 237 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006810 | transport |
| GO:0016021 | integral to membrane |
| GO:0016192 | vesicle-mediated transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.