PH01001957G0090's details annotation
1.Annotation
ICBR annotation: mRNA-decapping enzyme, putative, expressed
Blast result AT1G08370 : 3.90E-72
Blast annotation: decapping 1
2.Location
Scaffold: PH01001957
Strand: +
| Region | Start | End |
| gene | 63791 | 65144 |
| mRNA | 63791 | 65144 |
| exon | 63791 | 64404 |
| exon | 64493 | 65144 |
| CDS | 64225 | 64404 |
| CDS | 64493 | 64654 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06058.12 | DCP1 | 24 | 138 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA degradation | mRNA-decapping enzyme 1B [EC:3.-.-.-] | ko03018 | K12611 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.