PH01001961G0060's details annotation
1.Annotation
ICBR annotation: zinc finger protein, putative, expressed
Blast result AT4G23860 : 1.30E-80
Blast annotation: PHD finger protein-related
2.Location
Scaffold: PH01001961
Strand: -
| Region | Start | End |
| gene | 58337 | 66075 |
| mRNA | 58337 | 66075 |
| exon | 58337 | 60164 |
| exon | 62143 | 62246 |
| exon | 62957 | 63037 |
| exon | 63096 | 63731 |
| exon | 63843 | 63894 |
| exon | 64258 | 64568 |
| exon | 65766 | 66075 |
| CDS | 59864 | 60164 |
| CDS | 62143 | 62246 |
| CDS | 62957 | 63037 |
| CDS | 63096 | 63731 |
| CDS | 63843 | 63894 |
| CDS | 64258 | 64568 |
| CDS | 65766 | 65873 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.