Annotation of co-expression genes

PH01001977G0150's details annotation

1.Annotation

ICBR annotation: OsWAK80 - OsWAK receptor-like protein kinase, expressed

Blast result AT1G21270 : 7.00E-137
Blast annotation: wall-associated kinase 2

2.Location

Scaffold: PH01001977
Strand: +

RegionStartEnd
gene9420297796
mRNA9420297796
exon9420294860
exon9576896206
exon9630096455
exon9656297796
CDS9441194860
CDS9576896206
CDS9630096455
CDS9656297730

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000668RLK-Pelle_WAK (from iTAK)
polysaccharide_binding
protein binding,
calcium ion binding,
ubiquitin ligase complex,
potassium_ion_transmembrane_transport
protein ubiquitination,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13947.5GUB_WAK_bind37141
PF00069.24Pkinase418682

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005509calcium ion binding
GO:0005515protein binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups
GO:0030247polysaccharide binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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