Annotation of co-expression genes

PH01001978G0170's details annotation

1.Annotation

ICBR annotation: IBS1, putative, expressed

Blast result AT1G18670 : 0.00E+00
Blast annotation: Protein kinase superfamily protein

2.Location

Scaffold: PH01001978
Strand: +

RegionStartEnd
gene140078147243
mRNA140078147243
exon140078141161
exon141789142073
exon142171142488
exon143015143242
exon143993144090
exon144351144459
exon144610145152
exon145233145365
exon145930147243
CDS140784141161
CDS141789142073
CDS142171142488
CDS143015143242
CDS143993144090
CDS144351144459
CDS144610145152
CDS145233145365
CDS145930145949

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase121405

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.