PH01001980G0240's details annotation
1.Annotation
ICBR annotation: AMP deaminase, putative, expressed
Blast result AT2G38280 : 6.00E-140
Blast annotation: AMP deaminase, putative / myoadenylate deaminase, putative
2.Location
Scaffold: PH01001980
Strand: +
| Region | Start | End |
| gene | 181606 | 187793 |
| mRNA | 181606 | 187793 |
| exon | 181606 | 182307 |
| exon | 182999 | 183188 |
| exon | 183853 | 184031 |
| exon | 184116 | 184167 |
| exon | 184257 | 184384 |
| exon | 184491 | 184670 |
| exon | 184775 | 184842 |
| exon | 184933 | 185075 |
| exon | 187282 | 187793 |
| CDS | 182020 | 182307 |
| CDS | 182999 | 183188 |
| CDS | 183853 | 184031 |
| CDS | 184116 | 184167 |
| CDS | 184257 | 184384 |
| CDS | 184491 | 184670 |
| CDS | 184775 | 184842 |
| CDS | 184933 | 185075 |
| CDS | 187282 | 187589 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00962.21 | A_deaminase | 306 | 423 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003876 | AMP deaminase activity |
| GO:0006188 | IMP biosynthetic process |
| GO:0009168 | purine ribonucleoside monophosphate biosynthetic process |
| GO:0019239 | deaminase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.