PH01001985G0050's details annotation
1.Annotation
ICBR annotation: SAC3/GANP family protein, expressed
Blast result AT3G06290 : 1.70E-74
Blast annotation: SAC3/GANP/Nin1/mts3/eIF-3 p25 family
2.Location
Scaffold: PH01001985
Strand: +
| Region | Start | End |
| gene | 74734 | 77555 |
| mRNA | 74734 | 77555 |
| exon | 74734 | 77555 |
| CDS | 75704 | 77218 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000508 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis Tropane,_piperidine_and_pyridine_alkaloid_biosynthesis CAMK_CDPK (from iTAK) Novobiocin_biosynthesis Isoquinoline_alkaloid_biosynthesis Tyrosine_metabolism Ubiquinone_and_other_terpenoid-quinone_biosynthesis Cysteine_and_methionine_metabolism Phenylalanine_metabolism cellular amino acid metabolic process, |
| coexpression network | CFinderM001184 | CAMK_CDPK (from iTAK) |
| coexpression network | CFinderM001455 | Amino_sugar_and_nucleotide_sugar_metabolism CAMK_CDPK (from iTAK) carbohydrate phosphorylation, mitochondrial electron transport, ubiquinol to cytochrome c, galactose metabolic process, ubiquinol-cytochrome-c reductase activity, galactokinase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.