Annotation of co-expression genes

PH01001990G0360's details annotation

1.Annotation

ICBR annotation: PHS1, putative, expressed

Blast result AT5G23720 : 0.00E+00
Blast annotation: dual specificity protein phosphatase family protein

2.Location

Scaffold: PH01001990
Strand: -

RegionStartEnd
gene203196213280
mRNA203196213280
exon203196203813
exon204123204280
exon204438204665
exon204745204891
exon205482206490
exon206573206733
exon206811206987
exon207257207479
exon208547208656
exon210150210377
exon210559210664
exon211101212428
exon212535213280
CDS203453203813
CDS204123204280
CDS204438204665
CDS204745204891
CDS205482206490
CDS206573206733
CDS206811206987
CDS207257207479
CDS208547208656
CDS210150210377
CDS210559210664
CDS211101212428
CDS212535212579

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00078.26RVT_124153
PF09192.9Act-Frag_cataly631929
PF00782.19DSPc12071339

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003723RNA binding
GO:0003964RNA-directed DNA polymerase activity
GO:0004725protein tyrosine phosphatase activity
GO:0006278RNA-dependent DNA replication
GO:0006470protein dephosphorylation
GO:0008138protein tyrosine/serine/threonine phosphatase activity
GO:0016311dephosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups
GO:0016773phosphotransferase activity, alcohol group as acceptor
GO:0016791phosphatase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.