PH01001994G0130's details annotation
1.Annotation
ICBR annotation: uncharacterized protein yqxC, putative, expressed
Blast result AT3G25470 : 2.40E-85
Blast annotation: bacterial hemolysin-related
2.Location
Scaffold: PH01001994
Strand: -
| Region | Start | End |
| gene | 110278 | 116558 |
| mRNA | 110278 | 116558 |
| exon | 110278 | 111264 |
| exon | 111762 | 111806 |
| exon | 111967 | 112053 |
| exon | 112645 | 112773 |
| exon | 112902 | 113058 |
| exon | 113165 | 113319 |
| exon | 114216 | 114295 |
| exon | 114641 | 114722 |
| exon | 115918 | 116558 |
| CDS | 111100 | 111264 |
| CDS | 111762 | 111806 |
| CDS | 111967 | 112053 |
| CDS | 112645 | 112773 |
| CDS | 112902 | 113058 |
| CDS | 113165 | 113319 |
| CDS | 114216 | 114295 |
| CDS | 114641 | 114722 |
| CDS | 115918 | 115962 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01728.18 | FtsJ | 118 | 297 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0008168 | methyltransferase activity |
| GO:0032259 | methylation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.