PH01002000G0160's details annotation
1.Annotation
ICBR annotation: deoxynucleoside kinase family, putative, expressed
Blast result AT1G72040 : 3.00E-157
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein
2.Location
Scaffold: PH01002000
Strand: +
| Region | Start | End |
| gene | 97683 | 103390 |
| mRNA | 97683 | 103390 |
| exon | 97683 | 98340 |
| exon | 100247 | 100705 |
| exon | 100826 | 101203 |
| exon | 101285 | 101352 |
| exon | 101615 | 103390 |
| CDS | 98065 | 98340 |
| CDS | 100247 | 100705 |
| CDS | 100826 | 101203 |
| CDS | 101285 | 101352 |
| CDS | 101615 | 101825 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01712.18 | dNK | 148 | 402 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
| GO:0006139 | nucleobase-containing compound metabolic process |
| GO:0016773 | phosphotransferase activity, alcohol group as acceptor |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.