PH01002002G0220's details annotation
1.Annotation
ICBR annotation: ribosomal protein, putative, expressed
Blast result AT3G57490 : 2.00E-112
Blast annotation: Ribosomal protein S5 family protein
2.Location
Scaffold: PH01002002
Strand: +
| Region | Start | End |
| gene | 141055 | 144714 |
| mRNA | 141055 | 144714 |
| exon | 141055 | 141831 |
| exon | 142844 | 144714 |
| CDS | 141163 | 141831 |
| CDS | 142844 | 143005 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00333.19 | Ribosomal_S5 | 87 | 151 |
| PF03719.14 | Ribosomal_S5_C | 170 | 237 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | small subunit ribosomal protein S2e | ko03011 | K02981 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
| GO:0015935 | small ribosomal subunit |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.