PH01002007G0050's details annotation
1.Annotation
ICBR annotation: inorganic H+ pyrophosphatase, putative, expressed
Blast result AT1G16780 : 0.00E+00
Blast annotation: Inorganic H pyrophosphatase family protein
2.Location
Scaffold: PH01002007
Strand: -
| Region | Start | End |
| gene | 34094 | 44077 |
| mRNA | 34094 | 44077 |
| exon | 34094 | 34325 |
| exon | 34549 | 34768 |
| exon | 34851 | 34962 |
| exon | 35044 | 35199 |
| exon | 35282 | 35446 |
| exon | 35603 | 36040 |
| exon | 36588 | 36775 |
| exon | 37162 | 37207 |
| exon | 37514 | 37686 |
| exon | 38823 | 38906 |
| exon | 39140 | 39272 |
| exon | 39359 | 39506 |
| exon | 39581 | 39732 |
| exon | 40801 | 41004 |
| exon | 42232 | 42357 |
| exon | 42829 | 44077 |
| CDS | 34226 | 34325 |
| CDS | 34549 | 34768 |
| CDS | 34851 | 34962 |
| CDS | 35044 | 35199 |
| CDS | 35282 | 35446 |
| CDS | 35603 | 36040 |
| CDS | 36588 | 36775 |
| CDS | 37162 | 37207 |
| CDS | 37514 | 37686 |
| CDS | 38823 | 38906 |
| CDS | 39140 | 39272 |
| CDS | 39359 | 39506 |
| CDS | 39581 | 39732 |
| CDS | 40801 | 41004 |
| CDS | 42232 | 42357 |
| CDS | 42829 | 42918 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001418 | membrane, proton transport, Ether_lipid_metabolism inorganic diphosphatase activity, hydrogen-translocating pyrophosphatase activity, Glycerophospholipid_metabolism Oxidative_phosphorylation |
| coexpression network | CFinderM001651 | clathrin adaptor complex, COPI vesicle coat, retrograde vesicle-mediated transport, Golgi to ER, inorganic diphosphatase activity, hydrogen-translocating pyrophosphatase activity, Ether_lipid_metabolism proton transport, Glycerophospholipid_metabolism |
| coexpression network | CFinderM001710 | membrane, CBM22 Carbohydrate-Binding_Modules GH10 Glycoside_Hydrolases hydrolase activity, acting on glycosyl bonds, hydrogen-translocating pyrophosphatase activity, transporter activity, inorganic diphosphatase activity, proton transport, transport, isoprenoid biosynthetic process, Terpenoid_backbone_biosynthesis Oxidative_phosphorylation |
| coexpression network | CFinderM001829 | retrograde transport, endosome to Golgi, proton transport, hydrogen-translocating pyrophosphatase activity, inorganic diphosphatase activity, Ether_lipid_metabolism WRKY Transcription_Regulator(from PlantTFDB) Glycerophospholipid_metabolism Oxidative_phosphorylation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03030.15 | H_PPase | 115 | 384 |
| PF03030.15 | H_PPase | 390 | 839 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Oxidative phosphorylation | inorganic pyrophosphatase [EC:3.6.1.1] | ko00190 | K01507 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004427 | inorganic diphosphatase activity |
| GO:0009678 | hydrogen-translocating pyrophosphatase activity |
| GO:0015992 | proton transport |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.