PH01002016G0170's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G37520 : 7.10E-68
Blast annotation: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain
2.Location
Scaffold: PH01002016
Strand: -
| Region | Start | End |
| gene | 92616 | 102706 |
| mRNA | 92616 | 102706 |
| exon | 92616 | 93174 |
| exon | 93315 | 93455 |
| exon | 93787 | 93880 |
| exon | 94035 | 94099 |
| exon | 94236 | 94286 |
| exon | 94417 | 94635 |
| exon | 94721 | 94774 |
| exon | 94863 | 94920 |
| exon | 95008 | 95110 |
| exon | 95820 | 95906 |
| exon | 98801 | 98937 |
| exon | 99078 | 99130 |
| exon | 99233 | 99292 |
| exon | 99387 | 99471 |
| exon | 99622 | 99757 |
| exon | 99809 | 100074 |
| exon | 100196 | 100259 |
| exon | 100360 | 100558 |
| exon | 100667 | 100735 |
| exon | 100854 | 101142 |
| exon | 101358 | 101728 |
| exon | 101793 | 101873 |
| exon | 102001 | 102706 |
| CDS | 93100 | 93174 |
| CDS | 93315 | 93455 |
| CDS | 93787 | 93880 |
| CDS | 94035 | 94099 |
| CDS | 94236 | 94286 |
| CDS | 94417 | 94635 |
| CDS | 94721 | 94774 |
| CDS | 94863 | 94920 |
| CDS | 95008 | 95110 |
| CDS | 95820 | 95906 |
| CDS | 98801 | 98937 |
| CDS | 99078 | 99130 |
| CDS | 99233 | 99292 |
| CDS | 99387 | 99471 |
| CDS | 99622 | 99757 |
| CDS | 99809 | 100074 |
| CDS | 100196 | 100259 |
| CDS | 100360 | 100558 |
| CDS | 100667 | 100735 |
| CDS | 100854 | 101142 |
| CDS | 101358 | 101728 |
| CDS | 101793 | 101873 |
| CDS | 102001 | 102132 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001129 | nucleus, double-strand break repair, DNA metabolic process, RNA_polymerase Pyrimidine_metabolism Purine_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16135.4 | Jas | 535 | 607 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008080 | N-acetyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.