PH01002026G0350's details annotation
1.Annotation
ICBR annotation: OsSCP41 - Putative Serine Carboxypeptidase homologue, expressed
Blast result AT2G27920 : 2.00E-69
Blast annotation: serine carboxypeptidase-like 51
2.Location
Scaffold: PH01002026
Strand: -
| Region | Start | End |
| gene | 208194 | 212294 |
| mRNA | 208194 | 212294 |
| exon | 208194 | 208354 |
| exon | 208761 | 208899 |
| exon | 209000 | 209052 |
| exon | 209729 | 209779 |
| exon | 209893 | 209962 |
| exon | 210059 | 210252 |
| exon | 210380 | 210485 |
| exon | 210614 | 210681 |
| exon | 211896 | 211990 |
| exon | 212106 | 212294 |
| CDS | 208286 | 208354 |
| CDS | 208761 | 208899 |
| CDS | 209000 | 209052 |
| CDS | 209729 | 209779 |
| CDS | 209893 | 209962 |
| CDS | 210059 | 210252 |
| CDS | 210380 | 210485 |
| CDS | 210614 | 210681 |
| CDS | 211896 | 211990 |
| CDS | 212106 | 212238 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000084 | cell wall macromolecule catabolic process, chitin catabolic process, WRKY Transcription_Regulator(from PlantTFDB) defense response to fungus, ammonium_transport ammonium_transmembrane_transport defense response to bacterium, metabolic process, chitinase activity, |
| coexpression network | CFinderM000119 | |
| coexpression network | CFinderM000197 | Amino_sugar_and_nucleotide_sugar_metabolism cellular aldehyde metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00450.21 | Peptidase_S10 | 29 | 76 |
| PF00450.21 | Peptidase_S10 | 88 | 318 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004185 | serine-type carboxypeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.